Publications and Presentations

Driving innovation at the intersection of data science and healthcare

Our research continually explores new ways to combine data, models, and clinical insight to improve decision making in medicine. We challenge the status quo in patient care to explore bold approaches that transform the way therapies are designed, tested, and delivered. We strive to have each publication reflect a step toward a future where data science unlocks better outcomes for patients everywhere.

Take a look at our publications below:

  • Simulated Dosing Regimens of Subcutaneous Infliximab in Adults and Children with Inflammatory Bowel Disease: Exploring Switch and Initiation Strategies
    External collaboration Publication
    Weersink RA, Keizer RJ, Derijks LJJ
    European Journal of Drug Metabolism and Pharmacokinetics
    This study explores the effects of switching from intravenous (IV) to subcutaneous (SC) infliximab dosing in adults and children with inflammatory bowel disease, including those with obesity. The research found that while peak levels of the drug were higher with IV dosing, SC dosing led to more stable drug levels over time, with overall exposure remaining similar after the switch. However, the study suggests that current SC dosing regimens may not be optimal for everyone, particularly for patients with severe obesity, children, and those on high-frequency IV dosing, indicating a need for further clinical research to refine dosing strategies in these groups.
  • Machine Learning-Based Model Selection and Averaging Outperform Single-Model Approaches for a Priori Vancomycin Precision Dosing
    InsightRX-led Publication
    van Os W, O'Jeanson A, Troisi C, Liu C, Brooks JT, Hughes JH, Tong DMH, Keizer RJ
    CPT: Pharmacometrics & Systems Pharmacology
    In a study exploring precision dosing of vancomycin, a machine learning (ML) model was developed to select the most appropriate pharmacokinetic (PK) model for individual patients, using data from over 343,000 vancomycin therapeutic drug monitoring records. This ML approach, which involved ranking and averaging predictions from multiple PK models, proved more accurate than using any single PK model or other selection methods. The findings suggest that ML can significantly enhance the precision of early dosing decisions for vancomycin by ensuring the selection of the most suitable PK model for each patient.
  • Population Pharmacokinetics Model of Thioguanine in Patients with Inflammatory Bowel Disease
    External collaboration Publication
    Bayoumy AB, de Boer NKH, Keizer RJ, Derijks LJJ
    Clinical Pharmacokinetics
    This study introduces the first population pharmacokinetics (PopPK) model for thioguanine (TG) in patients with inflammatory bowel disease (IBD), aiming to improve treatment precision and efficacy while minimizing toxicity. The model, developed from data on 131 6-TGN trough concentrations from 28 IBD patients, showed that weight and aminosalicylic acid (5-ASA) use significantly affect TG clearance. This novel tool supports the implementation of model-informed precision dosing (MIPD) in clinical settings, suggesting a path forward for personalized medicine in IBD treatment.
  • Large Language Models and Their Applications in Drug Discovery and Development: A Primer for Quantitative Clinical Pharmacology and Translational Sciences
    External collaboration Publication
    Lu J, Choi K, Eremeev M, Gobburu J, Goswami S, Liu Q, Mo G, Musante CJ, Shahin MH
    Clinical and Translational Science
    This paper introduces the role of Large Language Models (LLMs) in clinical pharmacology and translational medicine, highlighting their potential to revolutionize drug discovery and development. It covers the basics of LLMs, their applications across various stages of pharmaceutical research, including target identification, preclinical research, and clinical trials, and their utility in tasks like medical writing and enhancing analytical workflows. The goal is to provide clinical pharmacologists and translational scientists with insights into leveraging LLMs to advance their research efforts.
  • Agents for Change: Artificial Intelligent Workflows for Quantitative Clinical Pharmacology and Translational Sciences
    External collaboration Publication
    Shahin MH, Goswami S, Lobentanzer S, Corrigan BW
    Clinical and Translational Science
    Artificial intelligence (AI) is revolutionizing the fields of Quantitative Clinical Pharmacology and Translational Sciences by introducing agentic workflows, which are systems where AI agents with varying levels of autonomy collaborate to perform complex tasks, keeping humans involved in the process. These AI-driven workflows are enhancing efficiency and consistency in data collection, analysis, modeling, and simulation, thereby streamlining pharmacokinetic and pharmacodynamic analyses, optimizing clinical trial designs, and advancing precision medicine. The review highlights the potential of AI to overcome current challenges in these fields, emphasizing the importance of collaboration, open-source initiatives, and robust regulatory frameworks to fully realize the benefits of AI in improving drug development and patient care.
  • Improved Vancomycin Target Attainment Following a Quasi-Experimental Change in the Default Pharmacokinetic Model
    InsightRX-led Publication
    Maria-Stephanie Hughes, Dominic M H Tong, Jasmine Hughes
    Open Forum Infectious Diseases
    A hospital-wide switch in the default vancomycin PK model was evaluated. The change increased attainment of therapeutic targets by ~12% in retrospective analysis, demonstrating the clinical impact of model choice.
  • Comparing Two-Sample Log-Linear Exposure Estimation with Bayesian Model-Informed Precision Dosing of Tobramycin in Adult Patients with Cystic Fibrosis
    External collaboration Publication
    Tong DMH, Hughes M-SA, Hu J, Pearson JC, Kubiak DW, Dionne BW, Hughes JH
    Antimicrobial Agents and Chemotherapy
    This study compares two methods of individualizing tobramycin dosing for patients with cystic fibrosis: traditional two-sample log-linear regression (LLR) and Bayesian model-informed precision dosing (MIPD). The research found that while LLR is more accurate for peak concentration predictions, Bayesian estimation performs better for trough concentrations. Notably, Bayesian estimation with a single sample and adjusted priors can achieve comparable accuracy to LLR, suggesting potential for fewer patient samples if population pharmacokinetic models are further refined.